#!/bin/bash -l

#$-P krcs
#$-l h_rt=12:00:00
#$-j y
#$-N markdown

module load texlive/2018
module load pandoc/2.5
module load R/3.6.0

# The following command will convert the notebook to html
Rscript -e 'rmarkdown::render("example.Rmd")'

# THe following command will convert the notebook to pdf format
Rscript -e 'rmarkdown::render(input="example.Rmd", output_format="pdf_document",output_file="example.pdf")'