#!/bin/sh
#
# Example SGE script for running mpi jobs
#
# Submit job with the command: qsub script
#
# Note: A line of the form "#$ qsub_option" is interpreted
#       by qsub as if "qsub_option" was passed to qsub on
#       the commandline.
#
# Set the hard runtime (aka wallclock) limit for this job,
# default is 2 hours. Format: -l h_rt=HH:MM:SS
#$ -l h_rt=2:00:00
#
# Invoke the mpi Parallel Environment for N processors.
# There is no default value for N, it must be specified.

#$ -pe mpi_4_tasks_per_node 4


# Merge stderr into the stdout file, to reduce clutter.
#$ -j y

## end of qsub options

# The system supports several different implemetations of MPI.
# This variable is used by the mpirun command to set up the proper
# runtime environment for the job. The allowed values are "openmpi"
# (the default), "mpich," and "mpich2." The runtime setting should
# match the setting in effect when the program was compiled.
export MPI_IMPLEMENTATION=openmpi

# By default, the script is executed in the directory from which
# it was submitted with qsub. You might want to change directories
# before invoking mpirun...
# cd somewhere

# The SLOTS variable is set by SGE to the number of processors
# requested by the "-pe mpi N" option.

PROG="example1_3"

#mpirun -np $NSLOTS mpi_program arg1 arg2 ...
#mpirun -np $NSLOTS $PROG "-r cputype=x5570"
mpirun -np $NSLOTS $PROG