#!/bin/csh
#
# SGE script for MATLAB standalone (generated with mcc)
#
# Submit job with the command: scc1% qsub batch_standalone
# To submit multiple batch jobs: scc1% submitmjobs 1 1 1 1 batch_standalone
# (See submitmjobs for instructions)
#
# Note: A line of the form "#$ qsub_option" is interpreted by qsub
#       as if "qsub_option" was passed to qsub on the commandline.
#
## Start qsub instructions here ################################
# Set runtime (aka wallclock) limit for this job for each core,
# Format: -l h_rt=HH:MM:SS (need not specify if <= 12 hours)
#$ -l h_rt=24:00:00
#
# Invoke Parallel Environment -- only if multiprocessors are required
# There is no default value for processor count. You must provide.
# The standaloneDemo program needs multicores to test PCT usage
# If your own app use 1 core, prepend line with extra # or remove line
##$ -pe omp 4
#
# Merge stderr into the stdout file, to reduce clutter.
#$ -j y
# Send email to your-user-name@bu.edu when job aborted or ended
#$ -m ae
# Optionally, remove leading # to send email to another address
##$ -M your-email-address

## end of qsub options ########################################

echo "\n\n********************************************"
echo "* This job runs on $HOSTNAME"
echo "********************************************\n\n"

set NODENAME = `echo $HOSTNAME | sed 's/.scc.bu.edu//'`

# Running MATLAB standalone results in creation of a cache folder in home dir
# This may cause runtime issues. Below is a workaround.
set TMPDIR=/scratch/kadin/mcr_cache_root_$USER/$JOB_ID
mkdir -p $TMPDIR
setenv MCR_CACHE_ROOT $TMPDIR
echo "\n\n********************************************"
echo "* Created local scratch folder /net/$NODENAME$TMPDIR"
echo "********************************************\n\n"

# Ready to run standalone with commandline inputs (if required). For
# multicores, use $NSLOTS requested by you in #$ -pe above
# Output to screen go to your ?.o$JOB_ID file
runx2 $MATLAB_J

# remove TMPDIR from local scratch
rm -rf /net/$NODENAME$TMPDIR
echo "\n\n********************************************"
echo "* Removed local scratch folder /net/$NODENAME$TMPDIR"
echo "********************************************\n\n"