#!/bin/bash -l
# this script is a qsub companion script to handle single MATLAB
# PCT batch job. See run_pct_jobs for running Array of jobs.
# Usage:
# scc1$ qsub ./run_matlab_pct_job                    # 4 cores, n=100
# scc1$ qsub -pe omp 8 ./run_matlab_pct_job          # 8 cores, n=100
# scc1$ qsub -pe omp 8 -v n=200 ./run_matlab_pct_job # 8 cores, n=200
# Requires RCS MATLAB utilities. Add this line to your startup.m
# addpath(genpath('/project/scv/examples/matlab/RCS_utils'),'-begin')
#
# Specify SGE batch scheduler options
# Merge output and error files in one
#$ -j y
# Send email to SCC userID when job finished or aborted
#$ -m ae
# Give the job(s) a name
#$ -N myJobs
# Request 4 cores from omp queue (example needs multicores)
# For serial apps, prepend the line below with another #
#$ -pe omp 4
# set default value for n; override with qsub -v at runtime
#$ -v n=100
# Load newest version of matlab on SCC
module load matlab
# Execute the Matlab program
matlab -nodisplay -r "runBatchJob($n, $NSLOTS); exit"