Index of /examples/bioinformatics/sparseassembler

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[DIR] Parent Directory - [   ] sparse_job.qsub 08-Mar-2015 20:24 492

SparseAssembler package example

To run SparseAssembler at the command line:

scc4% module load sparseassembler/2013.03.31

scc4% SparseAssembler g 10 k 63 LD 0 GS 200000000 NodeCovTh 1 EdgeCovTh 0 BFS 1 PathCovTh 100 ResolveBranchesPE 1 LinkCovTh 1 i1 frag_1.fastq i2 frag_2.fastq i1 shortjump_1.fastq i2 shortjump_2.fastq o1 longjump_1.fastq o2 longjump_2.fastq

To submit a job, execute command:
scc4% qsub -P my_project sparse_job.qsub

Sparse Assembler website:
http://sourceforge.net/p/sparseassembler/home/Home/