#!/bin/bash -l

#Give the name to the job
#$ -N oases_step_by_step

#Send an email when the job is finished (or aborted)
#$ -m ae

#Join the error and output file
#$ -j y

#Sepcify the version of velvet
module load velvet/1.2.10
module load oases/0.2.09

#Run the program
oases_pipeline.py -m 21 -M 23 -o out -d '-short -fasta test_reads.fa'

echo "done! check merged/ directory for results"