Index of /examples/bioinformatics/oases

Icon  Name                    Last modified      Size  Description
[DIR] Parent Directory - [DIR] data/ 23-Aug-2016 17:48 - [DIR] directory_21/ 24-Aug-2016 10:36 - [   ] oases.qsub 23-Aug-2016 20:09 334

Oases

To run oases at the command line:

scc4% module load oases/0.2.08


Get the list of options to run with oases:
scc4% oases


Run some test:
scc4% velveth directory 21,23 data/test_reads.fa
scc4% velvetg directory_21 -read_trkg yes
scc4% oases directory_21


To submit a job, execute command:
scc4% qsub -P my_project oases.qsub


Manual for oases:
https://www.ebi.ac.uk/~zerbino/oases/OasesManual.pdf