Index of /examples/bioinformatics/mummer

Icon  Name                    Last modified      Size  Description
[DIR] Parent Directory - [   ] mummer.qsub 06-Mar-2015 17:24 463 [   ] D_pseudoobscura_cont..> 20-May-2005 15:53 42K [   ] D_melanogaster_2Rsli..> 20-May-2005 15:53 1.6K [   ] D_melanogaster_2Rsli..> 20-May-2005 15:53 35K [   ] D_melanogaster_2Rsli..> 20-May-2005 15:53 1.6K

MuMmer package example

To run MuMmer at the command line:

scc4% module load mummer/3.23

scc4% mapview -n 1 -p mapview promer.coords

scc4% mapview -n 1 -p mapview promer.coords D_melanogaster_2Rslice.utr D_melanogaster_2Rslice.cds

scc4% mapview -n 1 -f pdf -p mapview promer.coords D_melanogaster_2Rslice.utr D_melanogaster_2Rslice.cds

To submit a job, execute command:
scc4% qsub -P my_project mummer_job.qsub

Manual for MuMmer:
http://mummer.sourceforge.net/manual/