Index of /examples/bioinformatics/celera

Icon  Name                    Last modified      Size  Description
[DIR] Parent Directory - [   ] celera_job.qsub 08-Mar-2015 19:02 244 [   ] a006.frg.bz2 09-Jan-2012 20:20 224K

Celera package example

To run celera at the command line:

scc4% module load celera/8.3rc1

scc4% celera -version
CA version 8.3rc1 ($Id: AS_GKP_main.C 4597 2015-02-03 03:12:17Z brianwalenz $).
CA version 8.3rc1 ($Id: AS_CGB_unitigger.C 4518 2014-03-31 20:11:04Z brianwalenz $).
CA version 8.3rc1 ($Id: BuildUnitigs.C 4371 2013-08-01 17:19:47Z brianwalenz $).
Using up to 12 OpenMP threads.
CA version 8.3rc1 ($Id: AS_CGW_main.C 4557 2014-08-11 12:24:27Z brianwalenz $).
CA version 8.3rc1 ($Id: terminator.C 4371 2013-08-01 17:19:47Z brianwalenz $).


scc4% celera -options


To submit a job, execute command:
scc4% qsub -P my_project celera_job.qsub

Manual for celera:
http://wgs-assembler.sourceforge.net/wiki/index.php?title=Main_Page