Index of /examples/bioinformatics/abyss

Icon  Name                    Last modified      Size  Description
[DIR] Parent Directory - [   ] abyss_job.qsub 06-Mar-2015 17:07 405

ABySS package example

To run ABySS at the command line:

scc4% module load abyss/1.5.2

scc4% abyss-pe k=25 name=test in='/share/pkg/abyss/1.5.2/install/data/test-data/reads1.fastq /share/pkg/abyss/1.5.2/install/data/test-data/reads2.fastq'

scc4% abyss-fac test-unitigs.fa


To submit a job, execute command:
scc4% qsub -P my_project abyss_job.qsub

Manual for ABySS:
https://github.com/bcgsc/abyss#abyss